Tomisin Adebari, Viola Fanfani, Marouen Ben Guebila, Derrick DeConti, Katherine Hoff Shutta, Camila M Lopes-Ramos, Lauren Hsu, Dawn L DeMeo, John Quackenbush, Tara Eicher
Biology of Sex Differences, vol. 17, BioMed Central, 2026, p. 134
Sex differences in gene regulation and its impact on cancer incidence
Camila M Lopes-Ramos, Rebekka Burkholz, Marouen Ben Guebila, Viola Fanfani, Enakshi Saha, Katherine H Shutta, Kimberly Glass, John Quackenbush, Dawn L DeMeo
Iscience, vol. 29, Elsevier, 2026
Enakshi Saha, Marouen Ben Guebila, Viola Fanfani, Katherine H Shutta, Dawn L DeMeo, John Quackenbush, Camila M Lopes-Ramos
npj Aging, vol. 11, Nature Publishing Group UK London, 2025, p. 61
Chen Chen, Enakshi Saha, Jonas Fischer, Marouen Ben Guebila, Viola Fanfani, Katherine H Shutta, Megha Padi, Kimberly Glass, Dawn L DeMeo, Camila M Lopes-Ramos, others
Biology of sex Differences, vol. 16, BioMed Central London, 2025, p. 71
Reproducible processing of TCGA regulatory networks
Viola Fanfani, Katherine H Shutta, Panagiotis Mandros, Jonas Fischer, Enakshi Saha, Soel Micheletti, Chen Chen, Marouen Ben Guebila, Camila M Lopes-Ramos, John Quackenbush
GigaScience, vol. 14, Oxford University Press, 2025, pp. giaf126
Sex-biased regulation of extracellular matrix genes in chronic obstructive pulmonary disease
Camila M Lopes-Ramos, Katherine H Shutta, Min Hyung Ryu, Yichen Huang, Enakshi Saha, John Ziniti, Robert Chase, Brian D Hobbs, Jeong H Yun, Peter Castaldi, others
American Journal of Respiratory Cell and Molecular Biology, vol. 72, Oxford University Press, 2025, pp. 72--81
Bayesian inference of sample-specific coexpression networks
Enakshi Saha, Viola Fanfani, Panagiotis Mandros, Marouen Ben Guebila, Jonas Fischer, Katherine H Shutta, Dawn L DeMeo, Camila M Lopes-Ramos, John Quackenbush
Genome research, vol. 34, Cold Spring Harbor Laboratory Press, 2024, pp. 1397--1410
Gene regulatory networks reveal sex difference in lung adenocarcinoma
Enakshi Saha, Marouen Ben Guebila, Viola Fanfani, Jonas Fischer, Katherine H Shutta, Panagiotis Mandros, Dawn L DeMeo, John Quackenbush, Camila M Lopes-Ramos
Biology of sex differences, vol. 15, BioMed Central London, 2024, p. 62
The Network Zoo: a multilingual package for the inference and analysis of gene regulatory networks
Marouen Ben Guebila, Tian Wang, Camila M Lopes-Ramos, Viola Fanfani, Des Weighill, Rebekka Burkholz, Daniel Schlauch, Joseph N Paulson, Michael Altenbuchinger, Katherine H Shutta, others
Genome Biology, vol. 24, BioMed Central London, 2023, p. 45
GRAND: a database of gene regulatory network models across human conditions
Marouen Ben Guebila, Camila M Lopes-Ramos, Deborah Weighill, Abhijeet Rajendra Sonawane, Rebekka Burkholz, Behrouz Shamsaei, John Platig, Kimberly Glass, Marieke L Kuijjer, John Quackenbush
Nucleic acids research, vol. 50, Oxford University Press, 2022, pp. D610--D621
Regulatory network of PD1 signaling is associated with prognosis in glioblastoma multiforme
Camila M Lopes-Ramos, Tatiana Belova, Tess H Brunner, Marouen Ben Guebila, Daniel Osorio, John Quackenbush, Marieke L Kuijjer
Cancer research, vol. 81, American Association for Cancer Research, 2021, pp. 5401--5412
Genome-wide sex and gender differences in cancer
Camila M Lopes-Ramos, John Quackenbush, Dawn L DeMeo
Frontiers in oncology, vol. 10, Frontiers, 2020, p. 597788
Sex differences in gene expression and regulatory networks across 29 human tissues
Camila M Lopes-Ramos, Cho-Yi Chen, Marieke L Kuijjer, Joseph N Paulson, Abhijeet R Sonawane, Maud Fagny, John Platig, Kimberly Glass, John Quackenbush, Dawn L DeMeo
Cell reports, vol. 31, Elsevier, 2020
Gene Regulatory Network Analysis Identifies Sex-Linked Differences in Colon Cancer Drug Metabolism
CM Lopes-Ramos, ML Kuijjer, S Ogino, CS Fuchs, DL DeMeo, K Glass, J Quackenbush
Cancer Research, vol. 78, doi: 10.1158/0008-5472.CAN-18-0454, 2018, pp. 5538--5547
E2F1 somatic mutation within miRNA target site impairs gene regulation in colorectal cancer
Camila M Lopes-Ramos, Bruna P Barros, Fernanda C Koyama, Paola A Carpinetti, Julia Pezuk, Nayara TS Doimo, Angelita Habr-Gama, Rodrigo O Perez, Raphael B Parmigiani
PLoS One, vol. 12, Public Library of Science San Francisco, CA USA, 2017, pp. e0181153
Regulatory network changes between cell lines and their tissues of origin
Camila M Lopes-Ramos, Joseph N Paulson, Cho-Yi Chen, Marieke L Kuijjer, Maud Fagny, John Platig, Abhijeet R Sonawane, Dawn L DeMeo, John Quackenbush, Kimberly Glass
BMC genomics, vol. 18, BioMed Central London, 2017, p. 723
Camila Lopes-Ramos, Fernanda C Koyama, Angelita Habr-Gama, Anna Christina M Salim, Fabiana Bettoni, Paula F Asprino, Gustavo S Franca, Joaquim Gama-Rodrigues, Raphael B Parmigiani, Rodrigo O Perez, others
Cancer genetics, vol. 208, Elsevier, 2015, pp. 319--326
Camila Miranda Lopes-Ramos, Angelita Habr-Gama, Bruna de Souza Quevedo, Natalia Mariana Felicio, Fabiana Bettoni, Fernanda Christtanini Koyama, Paula Fontes Asprino, Pedro Alexandre Galante, Joaquim Gama-Rodrigues, Anamaria Aranha Camargo, others
BMC medical genomics, vol. 7, BioMed Central London, 2014, p. 68